Package: easyEWAS
Title: Perform and Visualize EWAS Analysis
Version: 1.0.1
Authors@R: 
    c(
    person(
    given = "Yuting", 
    family = "Wang", 
    email = "ytwang@pku.edu.cn",
    role = c("aut", "cre")),
    person(
    given = "Xu", 
    family = "Gao", 
    email = "xu.gao@pku.edu.cn",
    role = c("aut"))
    )
Description: Tools for conducting epigenome-wide association studies
        (EWAS) and visualizing results. Users provide sample metadata
        and methylation matrices to run EWAS with linear models, linear
        mixed-effects models, or Cox models. The package supports
        downstream visualization, bootstrap validation, enrichment
        analysis, batch effect correction, and differentially
        methylated region (DMR) analysis with optional parallel
        computing. Methods are described in Wang et al. (2025)
        <doi:10.1093/bioadv/vbaf026>, Johnson et al. (2007)
        <doi:10.1093/biostatistics/kxj037>, and Peters et al. (2015)
        <doi:10.1186/1756-8935-8-6>.
License: GPL (>= 3)
URL: https://github.com/ytwangZero/easyEWAS,
        https://easyewas-tutorial.github.io/
BugReports: https://github.com/ytwangZero/easyEWAS/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: R6, boot, CMplot, ddpcr, doParallel, dplyr, foreach, lmerTest,
        magrittr, parallel, readxl, survival, tictoc, vroom, withr,
        R.utils, lubridate
Suggests: AnnotationHub, ExperimentHub, DMRcate, sva, BiocParallel,
        clusterProfiler, enrichplot, org.Hs.eg.db, knitr, rmarkdown
Depends: R (>= 4.4.0)
LazyData: true
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libx11-dev zlib1g-dev
Repository: https://ytwangzero.r-universe.dev
Date/Publication: 2026-08-20 02:15:48 UTC
RemoteUrl: https://github.com/ytwangzero/easyewas
RemoteRef: HEAD
RemoteSha: 93910999b436a04b1731cd9acc2fe4f785e7a026
NeedsCompilation: no
Packaged: 2026-10-19 07:57:12 UTC; root
Author: Yuting Wang [aut, cre],
  Xu Gao [aut]
Maintainer: Yuting Wang <ytwang@pku.edu.cn>